Arpeggio

Arpeggio (DOI:10.1016/j.jmb.2016.12.004) is a program for interatomic contact analysis that comes packaged with RINRUS

Usage

python3 ~/git/RINRUS/bin/arpeggio/arpeggio.py

Input

• PDB file

For other keywords see Arpeggio instructions

Output

• [PDB].atomtypes
• [PDB].bs_contacts
• [PDB].contacts
• [PDB].specific.sift
• [PDB].sift
• [PDB].specific.siftmatch
• [PDB].siftmatch
• [PDB].specific.polarmatch
• [PDB].polarmatch
• [PDB].ri
• [PDB].rings
• [PDB].ari
• [PDB].amri
• [PDB].amam
• [PDB].residue_sifts

Only the [PDB].contacts file is needed for RINRUS.